J5_8XT0_001
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAA*UAUAC*GAA*UA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8XT0|1|L1|A|158, 8XT0|1|L1|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8XT0_001 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1346
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8XT0|1|L1|C|157
8XT0|1|L1|A|158
8XT0|1|L1|A|159
*
8XT0|1|L1|U|171
8XT0|1|L1|A|172
8XT0|1|L1|U|173
8XT0|1|L1|A|174
8XT0|1|L1|C|175
*
8XT0|1|L1|G|188
8XT0|1|L1|A|189
8XT0|1|L1|A|190
*
8XT0|1|L1|U|635
8XT0|1|L1|A|636
*
8XT0|1|L1|U|1010
8XT0|1|L1|G|1011
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain LV
- 39S ribosomal protein L22, mitochondrial
- Chain Lf
- Large ribosomal subunit protein bL32m
- Chain Lp
- Large ribosomal subunit protein mL42
- Chain Lq
- Large ribosomal subunit protein mL43
Coloring options: