J5_8XZ3_008
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8XZ3|1|A|C|2299, 8XZ3|1|A|G|2652, 8XZ3|1|A|G|2653, 8XZ3|1|A|A|2654, 8XZ3|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8XZ3_008 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0918
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8XZ3|1|A|U|2297
8XZ3|1|A|U|2298
8XZ3|1|A|C|2299
8XZ3|1|A|A|2300
*
8XZ3|1|A|U|2467
8XZ3|1|A|U|2468
8XZ3|1|A|U|2469
8XZ3|1|A|A|2470
*
8XZ3|1|A|U|2482
8XZ3|1|A|G|2483
*
8XZ3|1|A|C|2505
8XZ3|1|A|G|2506
*
8XZ3|1|A|C|2651
8XZ3|1|A|G|2652
8XZ3|1|A|G|2653
8XZ3|1|A|A|2654
8XZ3|1|A|U|2655
8XZ3|1|A|A|2656
8XZ3|1|A|A|2657
8XZ3|1|A|A|2658
8XZ3|1|A|A|2659
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain M
- Large ribosomal subunit protein uL15
- Chain X
- Large ribosomal subunit protein bL27
- Chain Y
- Large ribosomal subunit protein bL28
- Chain e
- Large ribosomal subunit protein bL35
Coloring options: