J5_8Y39_005
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8Y39|1|A|U|2103, 8Y39|1|A|G|2455, 8Y39|1|A|G|2456, 8Y39|1|A|A|2457, 8Y39|1|A|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y39_005 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0726
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|A|U|2101
8Y39|1|A|U|2102
8Y39|1|A|U|2103
8Y39|1|A|A|2104
*
8Y39|1|A|U|2270
8Y39|1|A|U|2271
8Y39|1|A|U|2272
8Y39|1|A|G|2273
*
8Y39|1|A|C|2285
8Y39|1|A|G|2286
*
8Y39|1|A|C|2308
8Y39|1|A|G|2309
*
8Y39|1|A|C|2454
8Y39|1|A|G|2455
8Y39|1|A|G|2456
8Y39|1|A|A|2457
8Y39|1|A|U|2458
8Y39|1|A|A|2459
8Y39|1|A|A|2460
8Y39|1|A|A|2461
8Y39|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain C
- Large ribosomal subunit protein uL2
- Chain J
- Large ribosomal subunit protein uL15
- Chain U
- Large ribosomal subunit protein bL27
- Chain V
- Large ribosomal subunit protein bL28
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