J5_8Y5Q_001

3D structure

PDB id

8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8Y5Q|1|1|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Y5Q_001 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.1654

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8Y5Q|1|1|C|47
8Y5Q|1|1|G|48
8Y5Q|1|1|A|49
8Y5Q|1|1|U|50
8Y5Q|1|1|G|51
8Y5Q|1|1|A|52
8Y5Q|1|1|A|53
8Y5Q|1|1|G|54
*
8Y5Q|1|1|C|116
8Y5Q|1|1|G|117
8Y5Q|1|1|A|118
8Y5Q|1|1|A|119
8Y5Q|1|1|U|120
8Y5Q|1|1|G|121
*
8Y5Q|1|1|C|130
8Y5Q|1|1|A|131
*
8Y5Q|1|1|U|148
8Y5Q|1|1|A|149
8Y5Q|1|1|U|150
*
8Y5Q|1|1|A|176
8Y5Q|1|1|G|177
8Y5Q|1|1|G|178

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34