J5_8Y5R_001

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8Y5R|1|1|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5R|1|1|C|47
8Y5R|1|1|G|48
8Y5R|1|1|A|49
8Y5R|1|1|U|50
8Y5R|1|1|G|51
8Y5R|1|1|A|52
8Y5R|1|1|A|53
8Y5R|1|1|G|54
*
8Y5R|1|1|C|116
8Y5R|1|1|G|117
8Y5R|1|1|A|118
8Y5R|1|1|A|119
8Y5R|1|1|U|120
8Y5R|1|1|G|121
*
8Y5R|1|1|C|130
8Y5R|1|1|A|131
*
8Y5R|1|1|U|148
8Y5R|1|1|A|149
8Y5R|1|1|U|150
*
8Y5R|1|1|A|176
8Y5R|1|1|G|177
8Y5R|1|1|G|178

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34