J5_8YLD_001

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8YLD|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8YLD_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1351

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8YLD|1|2|C|31
8YLD|1|2|U|32
8YLD|1|2|U|33
8YLD|1|2|G|34
8YLD|1|2|U|35
*
8YLD|1|2|A|473
8YLD|1|2|A|474
8YLD|1|2|A|475
8YLD|1|2|U|476
8YLD|1|2|A|477
8YLD|1|2|A|478
8YLD|1|2|C|479
*
8YLD|1|2|G|509
8YLD|1|2|G|510
8YLD|1|2|A|511
8YLD|1|2|A|512
8YLD|1|2|U|513
8YLD|1|2|G|514
*
8YLD|1|2|C|543
8YLD|1|2|A|544
8YLD|1|2|A|545
8YLD|1|2|U|546
*
8YLD|1|2|A|592
8YLD|1|2|U|593
8YLD|1|2|A|594
8YLD|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A