J5_8YLR_009
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8YLR|1|A|U|719, 8YLR|1|A|A|784, 8YLR|1|A|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YLR_009 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1226
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|A|C|675
8YLR|1|A|G|676
8YLR|1|A|A|677
8YLR|1|A|G|678
*
8YLR|1|A|C|702
8YLR|1|A|G|703
8YLR|1|A|U|704
8YLR|1|A|A|705
8YLR|1|A|A|706
*
8YLR|1|A|U|713
8YLR|1|A|G|714
8YLR|1|A|A|715
8YLR|1|A|A|716
8YLR|1|A|C|717
8YLR|1|A|G|718
8YLR|1|A|U|719
8YLR|1|A|A|720
8YLR|1|A|G|721
*
8YLR|1|A|C|749
8YLR|1|A|G|750
8YLR|1|A|A|751
*
8YLR|1|A|U|782
8YLR|1|A|A|783
8YLR|1|A|A|784
8YLR|1|A|G|785
8YLR|1|A|A|786
8YLR|1|A|G|787
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain c
- Large ribosomal subunit protein uL15
- Chain d
- Large ribosomal subunit protein eL29
- Chain k
- Large ribosomal subunit protein eL36A
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