J5_8YP6_003

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8YP6|1|a|A|105, 8YP6|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8YP6_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1794

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.2

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8YP6|1|a|C|62
8YP6|1|a|A|63
8YP6|1|a|A|64
8YP6|1|a|G|65
*
8YP6|1|a|C|102
8YP6|1|a|G|103
8YP6|1|a|A|104
8YP6|1|a|A|105
8YP6|1|a|C|106
8YP6|1|a|G|107
8YP6|1|a|G|108
8YP6|1|a|G|109
*
8YP6|1|a|C|314
8YP6|1|a|A|315
8YP6|1|a|C|316
*
8YP6|1|a|G|337
8YP6|1|a|A|338
8YP6|1|a|C|339
*
8YP6|1|a|G|350
8YP6|1|a|G|351
8YP6|1|a|C|352
8YP6|1|a|A|353
8YP6|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20