J5_8ZDC_002
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8ZDC|1|2|A|92, 8ZDC|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZDC_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0749
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZDC|1|2|C|53
8ZDC|1|2|A|54
8ZDC|1|2|U|55
8ZDC|1|2|G|56
*
8ZDC|1|2|C|89
8ZDC|1|2|G|90
8ZDC|1|2|A|91
8ZDC|1|2|A|92
8ZDC|1|2|U|93
8ZDC|1|2|G|94
8ZDC|1|2|G|95
8ZDC|1|2|C|96
*
8ZDC|1|2|G|434
8ZDC|1|2|A|435
8ZDC|1|2|G|436
*
8ZDC|1|2|C|457
8ZDC|1|2|A|458
8ZDC|1|2|C|459
*
8ZDC|1|2|G|470
8ZDC|1|2|G|471
8ZDC|1|2|C|472
8ZDC|1|2|A|473
8ZDC|1|2|G|474
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain G
- Small ribosomal subunit protein eS6
- Chain I
- Small ribosomal subunit protein eS8
- Chain J
- Small ribosomal subunit protein uS4
- Chain Y
- Small ribosomal subunit protein eS24
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: