J5_8ZEJ_004

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8ZEJ|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ZEJ_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0755

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8ZEJ|1|b|C|47
8ZEJ|1|b|G|48
8ZEJ|1|b|A|49
8ZEJ|1|b|U|50
8ZEJ|1|b|G|51
8ZEJ|1|b|A|52
8ZEJ|1|b|A|53
8ZEJ|1|b|G|54
*
8ZEJ|1|b|C|116
8ZEJ|1|b|G|117
8ZEJ|1|b|A|118
8ZEJ|1|b|A|119
8ZEJ|1|b|U|120
8ZEJ|1|b|G|121
*
8ZEJ|1|b|C|130
8ZEJ|1|b|A|131
*
8ZEJ|1|b|U|148
8ZEJ|1|b|A|149
8ZEJ|1|b|U|150
*
8ZEJ|1|b|A|176
8ZEJ|1|b|G|177
8ZEJ|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34