J5_8ZFI_005

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

8ZFI|1|b|A|532, 8ZFI|1|b|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|b|C|531
8ZFI|1|b|A|532
8ZFI|1|b|G|533
*
8ZFI|1|b|C|560
8ZFI|1|b|G|561
8ZFI|1|b|U|562
8ZFI|1|b|A|563
8ZFI|1|b|C|564
*
8ZFI|1|b|G|577
8ZFI|1|b|G|578
8ZFI|1|b|G|579
*
8ZFI|1|b|C|1261
8ZFI|1|b|A|1262
*
8ZFI|1|b|U|2017
8ZFI|1|b|G|2018

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L32

Chain e

50S ribosomal protein L4

Chain r

50S ribosomal protein L20

Chain s

50S ribosomal protein L21

Chain t

50S ribosomal protein L22