J5_8ZGY_003

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8ZGY|1|LA|U|718, 8ZGY|1|LA|A|783, 8ZGY|1|LA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ZGY_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0881

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_23272.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|C|674
8ZGY|1|LA|G|675
8ZGY|1|LA|A|676
8ZGY|1|LA|G|677
*
8ZGY|1|LA|C|701
8ZGY|1|LA|G|702
8ZGY|1|LA|U|703
8ZGY|1|LA|A|704
8ZGY|1|LA|A|705
*
8ZGY|1|LA|U|712
8ZGY|1|LA|G|713
8ZGY|1|LA|A|714
8ZGY|1|LA|A|715
8ZGY|1|LA|C|716
8ZGY|1|LA|G|717
8ZGY|1|LA|U|718
8ZGY|1|LA|A|719
8ZGY|1|LA|G|720
*
8ZGY|1|LA|C|748
8ZGY|1|LA|G|749
8ZGY|1|LA|A|750
*
8ZGY|1|LA|U|781
8ZGY|1|LA|A|782
8ZGY|1|LA|A|783
8ZGY|1|LA|G|784
8ZGY|1|LA|A|785
8ZGY|1|LA|G|786

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LN

Large ribosomal subunit protein eL13A

Chain LS

Large ribosomal subunit protein eL18A

Chain Lc

Large ribosomal subunit protein uL15

Chain Ld

Large ribosomal subunit protein eL29

Chain Lk

Large ribosomal subunit protein eL36A