J5_8ZH3_007
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 8ZH3|1|S2|A|477, 8ZH3|1|S2|G|510, 8ZH3|1|S2|A|511, 8ZH3|1|S2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZH3_007 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.2856
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8ZH3|1|S2|C|31
8ZH3|1|S2|U|32
8ZH3|1|S2|U|33
8ZH3|1|S2|G|34
8ZH3|1|S2|U|35
*
8ZH3|1|S2|A|473
8ZH3|1|S2|A|474
8ZH3|1|S2|A|475
8ZH3|1|S2|U|476
8ZH3|1|S2|A|477
8ZH3|1|S2|A|478
8ZH3|1|S2|C|479
*
8ZH3|1|S2|G|509
8ZH3|1|S2|G|510
8ZH3|1|S2|A|511
8ZH3|1|S2|A|512
8ZH3|1|S2|U|513
8ZH3|1|S2|G|514
*
8ZH3|1|S2|C|543
8ZH3|1|S2|A|544
8ZH3|1|S2|A|545
8ZH3|1|S2|U|546
*
8ZH3|1|S2|A|592
8ZH3|1|S2|U|593
8ZH3|1|S2|A|594
8ZH3|1|S2|G|595
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sg
- Small ribosomal subunit protein eS30A
Coloring options: