J5_8ZHC_001
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8ZHC|1|LC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZHC_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0688
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZHC|1|LA|A|20
8ZHC|1|LA|G|21
8ZHC|1|LA|G|22
*
8ZHC|1|LC|C|35
8ZHC|1|LC|G|36
8ZHC|1|LC|A|37
8ZHC|1|LC|U|38
8ZHC|1|LC|G|39
8ZHC|1|LC|A|40
8ZHC|1|LC|A|41
8ZHC|1|LC|G|42
*
8ZHC|1|LC|U|102
8ZHC|1|LC|G|103
8ZHC|1|LC|A|104
8ZHC|1|LC|A|105
8ZHC|1|LC|C|106
8ZHC|1|LC|G|107
*
8ZHC|1|LC|C|115
8ZHC|1|LC|G|116
*
8ZHC|1|LC|C|137
8ZHC|1|LC|A|138
8ZHC|1|LC|U|139
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Ln
- Large ribosomal subunit protein eL39
Coloring options: