J5_8ZHC_003
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8ZHC|1|LA|C|716, 8ZHC|1|LA|G|717, 8ZHC|1|LA|U|718, 8ZHC|1|LA|A|783, 8ZHC|1|LA|G|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZHC_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.2785
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|C|674
8ZHC|1|LA|G|675
8ZHC|1|LA|A|676
8ZHC|1|LA|G|677
*
8ZHC|1|LA|C|701
8ZHC|1|LA|G|702
8ZHC|1|LA|U|703
8ZHC|1|LA|A|704
8ZHC|1|LA|A|705
*
8ZHC|1|LA|U|712
8ZHC|1|LA|G|713
8ZHC|1|LA|A|714
8ZHC|1|LA|A|715
8ZHC|1|LA|C|716
8ZHC|1|LA|G|717
8ZHC|1|LA|U|718
8ZHC|1|LA|A|719
8ZHC|1|LA|G|720
*
8ZHC|1|LA|C|748
8ZHC|1|LA|G|749
8ZHC|1|LA|A|750
*
8ZHC|1|LA|U|781
8ZHC|1|LA|A|782
8ZHC|1|LA|A|783
8ZHC|1|LA|G|784
8ZHC|1|LA|A|785
8ZHC|1|LA|G|786
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Lk
- Large ribosomal subunit protein eL36A
Coloring options: