J5_9B0S_017
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9B0S|1|s2|A|92, 9B0S|1|s2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B0S_017 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.06
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B0S|1|s2|C|53
9B0S|1|s2|A|54
9B0S|1|s2|U|55
9B0S|1|s2|G|56
*
9B0S|1|s2|C|89
9B0S|1|s2|G|90
9B0S|1|s2|A|91
9B0S|1|s2|A|92
9B0S|1|s2|U|93
9B0S|1|s2|G|94
9B0S|1|s2|G|95
9B0S|1|s2|C|96
*
9B0S|1|s2|G|434
9B0S|1|s2|A|435
9B0S|1|s2|G|436
*
9B0S|1|s2|C|457
9B0S|1|s2|A|458
9B0S|1|s2|C|459
*
9B0S|1|s2|G|470
9B0S|1|s2|G|471
9B0S|1|s2|C|472
9B0S|1|s2|A|473
9B0S|1|s2|G|474
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain cB
- Elongation factor 2
- Chain lV
- 60S ribosomal protein L23
- Chain sE
- Small ribosomal subunit protein eS4, X isoform
- Chain sG
- 40S ribosomal protein S6
- Chain sI
- 40S ribosomal protein S8
- Chain sJ
- 40S ribosomal protein S9
- Chain sY
- 40S ribosomal protein S24
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