3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
9B11|1|S2|A|92, 9B11|1|S2|C|472
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9B11_007 not in the Motif Atlas
Homologous match to J5_8CRE_020
Geometric discrepancy: 0.0609
The information below is about J5_8CRE_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9B11|1|S2|C|53
9B11|1|S2|A|54
9B11|1|S2|U|55
9B11|1|S2|G|56
*
9B11|1|S2|C|89
9B11|1|S2|G|90
9B11|1|S2|A|91
9B11|1|S2|A|92
9B11|1|S2|U|93
9B11|1|S2|G|94
9B11|1|S2|G|95
9B11|1|S2|C|96
*
9B11|1|S2|G|434
9B11|1|S2|A|435
9B11|1|S2|G|436
*
9B11|1|S2|C|457
9B11|1|S2|A|458
9B11|1|S2|C|459
*
9B11|1|S2|G|470
9B11|1|S2|G|471
9B11|1|S2|C|472
9B11|1|S2|A|473
9B11|1|S2|G|474

Current chains

Chain S2
18S rRNA

Nearby chains

Chain LV
60S ribosomal protein L23
Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SG
40S ribosomal protein S6
Chain SI
40S ribosomal protein S8
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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