J5_9B24_007
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9B24|1|Y|C|619, 9B24|1|Y|U|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B24_007 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1082
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|Y|C|618
9B24|1|Y|C|619
9B24|1|Y|G|620
*
9B24|1|Y|C|652
9B24|1|Y|G|653
9B24|1|Y|U|654
9B24|1|Y|G|655
9B24|1|Y|C|656
*
9B24|1|Y|G|669
9B24|1|Y|A|670
9B24|1|Y|G|671
*
9B24|1|Y|C|1376
9B24|1|Y|A|1377
*
9B24|1|Y|U|2241
9B24|1|Y|G|2242
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain b
- Large ribosomal subunit protein uL4
- Chain f
- Large ribosomal subunit protein uL13
- Chain m
- Large ribosomal subunit protein bL20
- Chain n
- Large ribosomal subunit protein bL21
- Chain o
- Large ribosomal subunit protein uL22
- Chain x
- Large ribosomal subunit protein bL32
Coloring options: