J5_9B50_004

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9B50|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9B50_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0555

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9B50|1|BA|C|47
9B50|1|BA|G|48
9B50|1|BA|A|49
9B50|1|BA|U|50
9B50|1|BA|G|51
9B50|1|BA|A|52
9B50|1|BA|A|53
9B50|1|BA|G|54
*
9B50|1|BA|C|116
9B50|1|BA|G|117
9B50|1|BA|A|118
9B50|1|BA|A|119
9B50|1|BA|U|120
9B50|1|BA|G|121
*
9B50|1|BA|C|130
9B50|1|BA|A|131
*
9B50|1|BA|U|148
9B50|1|BA|A|149
9B50|1|BA|U|150
*
9B50|1|BA|A|176
9B50|1|BA|G|177
9B50|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34