J5_9B50_006

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

9B50|1|BA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B50|1|BA|C|584
9B50|1|BA|G|585
9B50|1|BA|A|586
9B50|1|BA|C|587
9B50|1|BA|U|588
9B50|1|BA|U|589
*
9B50|1|BA|A|668
9B50|1|BA|G|669
9B50|1|BA|A|670
9B50|1|BA|C|671
*
9B50|1|BA|G|809
9B50|1|BA|U|810
9B50|1|BA|U|811
9B50|1|BA|C|812
*
9B50|1|BA|G|1195
9B50|1|BA|C|1196
*
9B50|1|BA|G|1250
9B50|1|BA|C|1251
9B50|1|BA|G|1252
9B50|1|BA|A|1253
9B50|1|BA|A|1254
9B50|1|BA|U|1255
9B50|1|BA|G|1256

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21