J5_9BDL_001

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

9BDL|1|A18S|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BDL_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0872

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9BDL|1|A18S|C|30
9BDL|1|A18S|U|31
9BDL|1|A18S|U|32
9BDL|1|A18S|G|33
9BDL|1|A18S|U|34
*
9BDL|1|A18S|A|521
9BDL|1|A18S|A|522
9BDL|1|A18S|A|523
9BDL|1|A18S|U|524
9BDL|1|A18S|A|525
9BDL|1|A18S|A|526
9BDL|1|A18S|C|527
*
9BDL|1|A18S|G|558
9BDL|1|A18S|G|559
9BDL|1|A18S|A|560
9BDL|1|A18S|A|561
9BDL|1|A18S|U|562
9BDL|1|A18S|G|563
*
9BDL|1|A18S|C|592
9BDL|1|A18S|C|593
9BDL|1|A18S|A|594
9BDL|1|A18S|U|595
*
9BDL|1|A18S|A|641
9BDL|1|A18S|U|642
9BDL|1|A18S|A|643
9BDL|1|A18S|G|644

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23

Chain AS30

40S ribosomal protein S30