J5_9BDN_001

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

9BDN|1|A18S|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BDN_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1082

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9BDN|1|A18S|C|30
9BDN|1|A18S|U|31
9BDN|1|A18S|U|32
9BDN|1|A18S|G|33
9BDN|1|A18S|U|34
*
9BDN|1|A18S|A|521
9BDN|1|A18S|A|522
9BDN|1|A18S|A|523
9BDN|1|A18S|U|524
9BDN|1|A18S|A|525
9BDN|1|A18S|A|526
9BDN|1|A18S|C|527
*
9BDN|1|A18S|G|558
9BDN|1|A18S|G|559
9BDN|1|A18S|A|560
9BDN|1|A18S|A|561
9BDN|1|A18S|U|562
9BDN|1|A18S|G|563
*
9BDN|1|A18S|C|592
9BDN|1|A18S|C|593
9BDN|1|A18S|A|594
9BDN|1|A18S|U|595
*
9BDN|1|A18S|A|641
9BDN|1|A18S|U|642
9BDN|1|A18S|A|643
9BDN|1|A18S|G|644

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23

Chain AS30

40S ribosomal protein S30