J5_9BH5_003
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GCAAACUAG*UG*CG*CGGACUCAG*UAC
- Length
- 25 nucleotides
- Bulged bases
- 9BH5|1|A5|G|2220, 9BH5|1|A5|A|2225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BH5_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.119
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9BH5|1|A5|G|1999
9BH5|1|A5|C|2000
9BH5|1|A5|A|2001
9BH5|1|A5|A|2002
9BH5|1|A5|A|2003
9BH5|1|A5|C|2004
9BH5|1|A5|U|2005
9BH5|1|A5|A|2006
9BH5|1|A5|G|2007
*
9BH5|1|A5|U|2031
9BH5|1|A5|G|2032
*
9BH5|1|A5|C|2213
9BH5|1|A5|G|2214
*
9BH5|1|A5|C|2218
9BH5|1|A5|G|2219
9BH5|1|A5|G|2220
9BH5|1|A5|A|2221
9BH5|1|A5|C|2222
9BH5|1|A5|U|2223
9BH5|1|A5|C|2224
9BH5|1|A5|A|2225
9BH5|1|A5|G|2226
*
9BH5|1|A5|U|2434
9BH5|1|A5|A|2435
9BH5|1|A5|C|2436
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain CB
- Large ribosomal subunit protein uL3
- Chain CR
- Large ribosomal subunit protein eL19
- Chain CV
- Large ribosomal subunit protein uL14
- Chain CW
- Large ribosomal subunit protein eL24
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