J5_9BH5_006
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAUG*CGUACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9BH5|1|B2|A|83, 9BH5|1|B2|C|404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BH5_006 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.091
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|B2|C|54
9BH5|1|B2|A|55
9BH5|1|B2|U|56
9BH5|1|B2|G|57
*
9BH5|1|B2|C|80
9BH5|1|B2|G|81
9BH5|1|B2|U|82
9BH5|1|B2|A|83
9BH5|1|B2|C|84
9BH5|1|B2|G|85
9BH5|1|B2|G|86
9BH5|1|B2|C|87
*
9BH5|1|B2|G|366
9BH5|1|B2|A|367
9BH5|1|B2|G|368
*
9BH5|1|B2|C|389
9BH5|1|B2|A|390
9BH5|1|B2|C|391
*
9BH5|1|B2|G|402
9BH5|1|B2|G|403
9BH5|1|B2|C|404
9BH5|1|B2|A|405
9BH5|1|B2|G|406
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein eS4
- Chain AG
- Small ribosomal subunit protein eS6
- Chain AI
- Small ribosomal subunit protein eS8
- Chain AJ
- Small ribosomal subunit protein uS4
- Chain AY
- Small ribosomal subunit protein eS24
- Chain CV
- Large ribosomal subunit protein uL14
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