J5_9BLN_001
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9BLN|1|A|C|593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BLN_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.0862
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BLN|1|A|C|30
9BLN|1|A|U|31
9BLN|1|A|U|32
9BLN|1|A|G|33
9BLN|1|A|U|34
*
9BLN|1|A|A|521
9BLN|1|A|A|522
9BLN|1|A|A|523
9BLN|1|A|U|524
9BLN|1|A|A|525
9BLN|1|A|A|526
9BLN|1|A|C|527
*
9BLN|1|A|G|558
9BLN|1|A|G|559
9BLN|1|A|A|560
9BLN|1|A|A|561
9BLN|1|A|U|562
9BLN|1|A|G|563
*
9BLN|1|A|C|592
9BLN|1|A|C|593
9BLN|1|A|A|594
9BLN|1|A|U|595
*
9BLN|1|A|A|641
9BLN|1|A|U|642
9BLN|1|A|A|643
9BLN|1|A|OMG|644
Current chains
- Chain A
- rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain E
- Small ribosomal subunit protein uS12
- Chain F
- Small ribosomal subunit protein eS30
- Chain U
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: