J5_9BUP_006
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 9BUP|1|SA|A|551
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BUP_006 not in the Motif Atlas
- Homologous match to J5_8CRE_018
- Geometric discrepancy: 0.0971
- The information below is about J5_8CRE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|C|31
9BUP|1|SA|U|32
9BUP|1|SA|U|33
9BUP|1|SA|G|34
9BUP|1|SA|U|35
*
9BUP|1|SA|A|479
9BUP|1|SA|A|480
9BUP|1|SA|A|481
9BUP|1|SA|U|482
9BUP|1|SA|A|483
9BUP|1|SA|A|484
9BUP|1|SA|C|485
*
9BUP|1|SA|G|516
9BUP|1|SA|G|517
9BUP|1|SA|A|518
9BUP|1|SA|A|519
9BUP|1|SA|U|520
9BUP|1|SA|G|521
*
9BUP|1|SA|C|550
9BUP|1|SA|A|551
9BUP|1|SA|A|552
9BUP|1|SA|U|553
*
9BUP|1|SA|A|599
9BUP|1|SA|U|600
9BUP|1|SA|A|601
9BUP|1|SA|G|602
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S6
- 40S ribosomal protein S30
- Chain SE
- 40S ribosomal protein S9
- Chain SQ
- 40S ribosomal protein S23
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