J5_9BUP_008
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CGAACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9BUP|1|SA|A|95, 9BUP|1|SA|C|430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BUP_008 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.065
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|C|54
9BUP|1|SA|A|55
9BUP|1|SA|A|56
9BUP|1|SA|G|57
*
9BUP|1|SA|C|92
9BUP|1|SA|G|93
9BUP|1|SA|A|94
9BUP|1|SA|A|95
9BUP|1|SA|C|96
9BUP|1|SA|G|97
9BUP|1|SA|G|98
9BUP|1|SA|C|99
*
9BUP|1|SA|G|392
9BUP|1|SA|A|393
9BUP|1|SA|G|394
*
9BUP|1|SA|C|415
9BUP|1|SA|A|416
9BUP|1|SA|C|417
*
9BUP|1|SA|G|428
9BUP|1|SA|G|429
9BUP|1|SA|C|430
9BUP|1|SA|A|431
9BUP|1|SA|G|432
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AM
- 60S ribosomal protein L23
- Chain S1
- 40S ribosomal protein S24
- Chain SE
- 40S ribosomal protein S9
- Chain SF
- 40S ribosomal protein S4
- Chain SH
- 40S ribosomal protein S6
- Chain SL
- 40S ribosomal protein S8
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