J5_9C3H_008
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9C3H|1|S2|A|92, 9C3H|1|S2|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9C3H_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.046
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9C3H|1|S2|C|53
9C3H|1|S2|A|54
9C3H|1|S2|U|55
9C3H|1|S2|G|56
*
9C3H|1|S2|C|89
9C3H|1|S2|G|90
9C3H|1|S2|A|91
9C3H|1|S2|A|92
9C3H|1|S2|PSU|93
9C3H|1|S2|G|94
9C3H|1|S2|G|95
9C3H|1|S2|C|96
*
9C3H|1|S2|G|434
9C3H|1|S2|A|435
9C3H|1|S2|OMG|436
*
9C3H|1|S2|C|457
9C3H|1|S2|A|458
9C3H|1|S2|C|459
*
9C3H|1|S2|G|470
9C3H|1|S2|G|471
9C3H|1|S2|C|472
9C3H|1|S2|A|473
9C3H|1|S2|G|474
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LV
- Large ribosomal subunit protein uL14
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- Small ribosomal subunit protein eS6
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SY
- Isoform 3 of Small ribosomal subunit protein eS24
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