3D structure

PDB id
9CG6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
UUUA*UUUG*CU*AG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
9CG6|1|a|U|2076, 9CG6|1|a|G|2428, 9CG6|1|a|G|2429, 9CG6|1|a|A|2430, 9CG6|1|a|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9CG6_009 not in the Motif Atlas
Homologous match to J5_4WF9_007
Geometric discrepancy: 0.0674
The information below is about J5_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.2
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9CG6|1|a|U|2074
9CG6|1|a|U|2075
9CG6|1|a|U|2076
9CG6|1|a|A|2077
*
9CG6|1|a|U|2243
9CG6|1|a|U|2244
9CG6|1|a|U|2245
9CG6|1|a|G|2246
*
9CG6|1|a|C|2258
9CG6|1|a|U|2259
*
9CG6|1|a|A|2281
9CG6|1|a|G|2282
*
9CG6|1|a|C|2427
9CG6|1|a|G|2428
9CG6|1|a|G|2429
9CG6|1|a|A|2430
9CG6|1|a|U|2431
9CG6|1|a|A|2432
9CG6|1|a|A|2433
9CG6|1|a|A|2434
9CG6|1|a|A|2435

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain c
50S ribosomal protein L2
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27
Chain w
50S ribosomal protein L28

Coloring options:


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