J5_9D7S_019
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9D7S|1|2a|A|109, 9D7S|1|2a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9D7S_019 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0761
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9D7S|1|2a|C|58
9D7S|1|2a|A|59
9D7S|1|2a|A|60
9D7S|1|2a|G|61
*
9D7S|1|2a|C|106
9D7S|1|2a|G|107
9D7S|1|2a|G|108
9D7S|1|2a|A|109
9D7S|1|2a|C|110
9D7S|1|2a|G|111
9D7S|1|2a|G|112
9D7S|1|2a|G|113
*
9D7S|1|2a|C|314
9D7S|1|2a|A|315
9D7S|1|2a|G|316
*
9D7S|1|2a|C|337
9D7S|1|2a|A|338
9D7S|1|2a|C|339
*
9D7S|1|2a|G|350
9D7S|1|2a|G|351
9D7S|1|2a|C|352
9D7S|1|2a|A|353
9D7S|1|2a|G|354
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2O
- 50S ribosomal protein L14
- Chain 2T
- 50S ribosomal protein L19
- Chain 2p
- 30S ribosomal protein S16
- Chain 2t
- 30S ribosomal protein S20
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