J5_9DFE_018

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9DFE_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.079

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9DFE|1|2a|C|36
9DFE|1|2a|U|37
9DFE|1|2a|G|38
9DFE|1|2a|G|39
*
9DFE|1|2a|C|403
9DFE|1|2a|U|404
9DFE|1|2a|U|405
9DFE|1|2a|G|406
*
9DFE|1|2a|C|436
9DFE|1|2a|U|437
9DFE|1|2a|G|438
9DFE|1|2a|A|439
9DFE|1|2a|A|441
9DFE|1|2a|C|442
*
9DFE|1|2a|G|492
9DFE|1|2a|G|493
9DFE|1|2a|U|494
9DFE|1|2a|A|495
9DFE|1|2a|A|496
9DFE|1|2a|U|498
9DFE|1|2a|A|499
9DFE|1|2a|G|500
*
9DFE|1|2a|C|545
9DFE|1|2a|G|546
9DFE|1|2a|A|547
9DFE|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12