J5_9DOV_004
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9DOV|1|A1|G|2116, 9DOV|1|A1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|A1|G|1906
9DOV|1|A1|C|1907
9DOV|1|A1|A|1908
9DOV|1|A1|A|1909
9DOV|1|A1|A|1910
9DOV|1|A1|A|1911
9DOV|1|A1|U|1912
9DOV|1|A1|A|1913
9DOV|1|A1|G|1914
*
9DOV|1|A1|U|1938
9DOV|1|A1|G|1939
*
9DOV|1|A1|U|2109
9DOV|1|A1|G|2110
*
9DOV|1|A1|C|2114
9DOV|1|A1|G|2115
9DOV|1|A1|G|2116
9DOV|1|A1|A|2117
9DOV|1|A1|C|2118
9DOV|1|A1|A|2119
9DOV|1|A1|A|2120
9DOV|1|A1|G|2121
9DOV|1|A1|G|2122
*
9DOV|1|A1|C|2331
9DOV|1|A1|A|2332
9DOV|1|A1|C|2333
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- Large ribosomal subunit protein eL24A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
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