J5_9E16_001
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAC*GAG
- Length
- 22 nucleotides
- Bulged bases
- 9E16|1|I|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9E16_001 not in the Motif Atlas
- Homologous match to J5_8B0X_004
- Geometric discrepancy: 0.0839
- The information below is about J5_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.3
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9E16|1|I|C|47
9E16|1|I|G|48
9E16|1|I|A|49
9E16|1|I|U|50
9E16|1|I|G|51
9E16|1|I|A|52
9E16|1|I|A|53
9E16|1|I|G|54
*
9E16|1|I|C|116
9E16|1|I|G|117
9E16|1|I|A|118
9E16|1|I|A|119
9E16|1|I|U|120
9E16|1|I|G|121
*
9E16|1|I|C|130
9E16|1|I|A|131
*
9E16|1|I|U|150
9E16|1|I|A|151
9E16|1|I|C|152
*
9E16|1|I|G|178
9E16|1|I|A|179
9E16|1|I|G|180
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain T
- 50S ribosomal protein L23
Coloring options: