J5_9E1S_001

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

9E1S|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9E1S_001 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0769

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9E1S|1|I|C|47
9E1S|1|I|G|48
9E1S|1|I|A|49
9E1S|1|I|U|50
9E1S|1|I|G|51
9E1S|1|I|A|52
9E1S|1|I|A|53
9E1S|1|I|G|54
*
9E1S|1|I|C|116
9E1S|1|I|G|117
9E1S|1|I|A|118
9E1S|1|I|A|119
9E1S|1|I|U|120
9E1S|1|I|G|121
*
9E1S|1|I|C|130
9E1S|1|I|A|131
*
9E1S|1|I|U|150
9E1S|1|I|A|151
9E1S|1|I|C|152
*
9E1S|1|I|G|178
9E1S|1|I|A|179
9E1S|1|I|G|180

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein bL34

Chain T

50S ribosomal protein L23