J5_9E6Q_001
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGAAGAAG*CGAAUG*UG*CG*CG
- Length
- 20 nucleotides
- Bulged bases
- 9E6Q|1|1|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9E6Q|1|1|C|39
9E6Q|1|1|G|40
9E6Q|1|1|A|41
9E6Q|1|1|A|42
9E6Q|1|1|G|43
9E6Q|1|1|A|44
9E6Q|1|1|A|45
9E6Q|1|1|G|46
*
9E6Q|1|1|C|107
9E6Q|1|1|G|108
9E6Q|1|1|A|109
9E6Q|1|1|A|110
9E6Q|1|1|U|111
9E6Q|1|1|G|112
*
9E6Q|1|1|U|121
9E6Q|1|1|G|122
*
9E6Q|1|1|C|144
9E6Q|1|1|G|145
*
9E6Q|1|1|C|158
9E6Q|1|1|G|159
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL13
- Chain AM
- 50S ribosomal protein L15e
- Chain AU
- Large ribosomal subunit protein uL23
- Chain Ad
- Large ribosomal subunit protein eL37
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