J5_9E6Q_002
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGAGUU*AGAC*GUUC*GC*GAAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9E6Q|1|1|U|1382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_15067.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9E6Q|1|1|G|665
9E6Q|1|1|G|666
9E6Q|1|1|A|667
9E6Q|1|1|G|668
9E6Q|1|1|U|669
9E6Q|1|1|U|670
*
9E6Q|1|1|A|785
9E6Q|1|1|G|786
9E6Q|1|1|A|787
9E6Q|1|1|C|788
*
9E6Q|1|1|G|927
9E6Q|1|1|U|928
9E6Q|1|1|U|929
9E6Q|1|1|C|930
*
9E6Q|1|1|G|1323
9E6Q|1|1|C|1324
*
9E6Q|1|1|G|1377
9E6Q|1|1|A|1378
9E6Q|1|1|A|1379
9E6Q|1|1|G|1380
9E6Q|1|1|A|1381
9E6Q|1|1|U|1382
9E6Q|1|1|C|1383
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4
- Chain AH
- Large ribosomal subunit protein eL13
- Chain AL
- Large ribosomal subunit protein uL15
- Chain Ab
- Large ribosomal subunit protein eL32
Coloring options: