J5_9E6Q_003
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGAG*CGUAG*CGAC*GG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43592.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9E6Q|1|1|C|682
9E6Q|1|1|G|683
9E6Q|1|1|A|684
9E6Q|1|1|G|685
*
9E6Q|1|1|C|709
9E6Q|1|1|G|710
9E6Q|1|1|U|711
9E6Q|1|1|A|712
9E6Q|1|1|G|713
*
9E6Q|1|1|C|720
9E6Q|1|1|G|721
9E6Q|1|1|A|722
9E6Q|1|1|C|723
*
9E6Q|1|1|G|753
9E6Q|1|1|G|754
*
9E6Q|1|1|C|769
9E6Q|1|1|G|770
9E6Q|1|1|U|771
9E6Q|1|1|A|772
9E6Q|1|1|G|773
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4
- Chain AH
- Large ribosomal subunit protein eL13
- Chain AL
- Large ribosomal subunit protein uL15
- Chain AP
- Large ribosomal subunit protein eL18
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