J5_9E6Q_005
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GCAAAUUGG*UG*UC*GUGGCAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9E6Q|1|1|G|1894, 9E6Q|1|1|G|1899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9E6Q_005 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.1127
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9E6Q|1|1|G|1818
9E6Q|1|1|C|1819
9E6Q|1|1|A|1820
9E6Q|1|1|A|1821
9E6Q|1|1|A|1822
9E6Q|1|1|U|1823
9E6Q|1|1|U|1824
9E6Q|1|1|G|1825
9E6Q|1|1|G|1826
*
9E6Q|1|1|U|1850
9E6Q|1|1|G|1851
*
9E6Q|1|1|U|1887
9E6Q|1|1|C|1888
*
9E6Q|1|1|G|1892
9E6Q|1|1|U|1893
9E6Q|1|1|G|1894
9E6Q|1|1|G|1895
9E6Q|1|1|C|1896
9E6Q|1|1|A|1897
9E6Q|1|1|A|1898
9E6Q|1|1|G|1899
9E6Q|1|1|G|1900
*
9E6Q|1|1|C|2109
9E6Q|1|1|A|2110
9E6Q|1|1|C|2111
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AI
- Large ribosomal subunit protein uL14
- Chain AQ
- Large ribosomal subunit protein eL19
- Chain AW
- Large ribosomal subunit protein eL24
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