Loop J5_9E6Q

3D structure

PDB id: 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.95 Å

Loop

Sequence: AGAAGUCC*GAAUAACCG*CCCAGACGUC*GG(UR3)UCAG*(OMC)GGUCU
Length: 40 nucleotides
Bulged bases: 9E6Q|1|1|U|2182, 9E6Q|1|1|A|2562, 9E6Q|1|1|U|2723, 9E6Q|1|1|C|2724
QA status: Modified nucleotides: UR3, OMC

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9E6Q|1|1|A|2177
9E6Q|1|1|G|2178
9E6Q|1|1|A|2179
9E6Q|1|1|A|2180
9E6Q|1|1|G|2181
9E6Q|1|1|U|2182
9E6Q|1|1|C|2183
9E6Q|1|1|C|2184
*
9E6Q|1|1|G|2560
9E6Q|1|1|A|2561
9E6Q|1|1|A|2562
9E6Q|1|1|U|2563
9E6Q|1|1|A|2564
9E6Q|1|1|A|2565
9E6Q|1|1|C|2566
9E6Q|1|1|C|2567
9E6Q|1|1|G|2568
*
9E6Q|1|1|C|2612
9E6Q|1|1|C|2613
9E6Q|1|1|C|2614
9E6Q|1|1|A|2615
9E6Q|1|1|G|2616
9E6Q|1|1|A|2617
9E6Q|1|1|C|2618
9E6Q|1|1|G|2619
9E6Q|1|1|U|2620
9E6Q|1|1|C|2621
*
9E6Q|1|1|G|2696
9E6Q|1|1|G|2697
9E6Q|1|1|UR3|2698
9E6Q|1|1|U|2699
9E6Q|1|1|C|2700
9E6Q|1|1|A|2701
9E6Q|1|1|G|2702
*
9E6Q|1|1|OMC|2720
9E6Q|1|1|G|2721
9E6Q|1|1|G|2722
9E6Q|1|1|U|2723
9E6Q|1|1|C|2724
9E6Q|1|1|U|2725

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 3: Putative signal-transduction protein with CBS domains
Chain AA: Large ribosomal subunit protein uL2
Chain AB: Large ribosomal subunit protein uL3
Chain AC: Large ribosomal subunit protein uL4
Chain AL: Large ribosomal subunit protein uL15

J5_9E6Q_006