J5_9EBB_003
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9EBB|1|I|C|620, 9EBB|1|I|U|664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9EBB_003 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.1245
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9EBB|1|I|C|619
9EBB|1|I|C|620
9EBB|1|I|G|621
*
9EBB|1|I|C|662
9EBB|1|I|G|663
9EBB|1|I|U|664
9EBB|1|I|G|665
9EBB|1|I|C|666
*
9EBB|1|I|G|679
9EBB|1|I|A|680
9EBB|1|I|G|681
*
9EBB|1|I|C|1392
9EBB|1|I|A|1393
*
9EBB|1|I|U|2255
9EBB|1|I|G|2256
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain R
- Large ribosomal subunit protein bL21
- Chain S
- 50S ribosomal protein L22
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