J5_9EC3_007

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UUCA*UUUA*UG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9EC3|1|I|C|2313, 9EC3|1|I|G|2666, 9EC3|1|I|G|2667, 9EC3|1|I|A|2668, 9EC3|1|I|U|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9EC3_007 not in the Motif Atlas

Homologous match to J5_8B0X_009

Geometric discrepancy: 0.1331

The information below is about J5_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9EC3|1|I|U|2311
9EC3|1|I|U|2312
9EC3|1|I|C|2313
9EC3|1|I|A|2314
*
9EC3|1|I|U|2481
9EC3|1|I|U|2482
9EC3|1|I|U|2483
9EC3|1|I|A|2484
*
9EC3|1|I|U|2496
9EC3|1|I|G|2497
*
9EC3|1|I|C|2519
9EC3|1|I|G|2520
*
9EC3|1|I|C|2665
9EC3|1|I|G|2666
9EC3|1|I|G|2667
9EC3|1|I|A|2668
9EC3|1|I|U|2669
9EC3|1|I|A|2670
9EC3|1|I|A|2671
9EC3|1|I|A|2672
9EC3|1|I|A|2673

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain C

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27

Chain n

Transfer RNA; tRNA

Chain y

Large ribosomal subunit protein bL28