J5_9ED0_003

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9ED0|1|2|A|92, 9ED0|1|2|C|472

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|C|53
9ED0|1|2|A|54
9ED0|1|2|U|55
9ED0|1|2|G|56
*
9ED0|1|2|C|89
9ED0|1|2|G|90
9ED0|1|2|A|91
9ED0|1|2|A|92
9ED0|1|2|PSU|93
9ED0|1|2|G|94
9ED0|1|2|G|95
9ED0|1|2|C|96
*
9ED0|1|2|G|434
9ED0|1|2|A|435
9ED0|1|2|OMG|436
*
9ED0|1|2|C|457
9ED0|1|2|A|458
9ED0|1|2|C|459
*
9ED0|1|2|G|470
9ED0|1|2|G|471
9ED0|1|2|C|472
9ED0|1|2|A|473
9ED0|1|2|G|474

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain J

Small ribosomal subunit protein uS4

Chain Y

40S ribosomal protein S24