J5_9F1B_001

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

9F1B|1|A2|C|594

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9F1B_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0803

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9F1B|1|A2|C|30
9F1B|1|A2|U|31
9F1B|1|A2|U|32
9F1B|1|A2|G|33
9F1B|1|A2|PSU|34
*
9F1B|1|A2|A|522
9F1B|1|A2|A|523
9F1B|1|A2|A|524
9F1B|1|A2|U|525
9F1B|1|A2|A|526
9F1B|1|A2|A|527
9F1B|1|A2|C|528
*
9F1B|1|A2|G|559
9F1B|1|A2|G|560
9F1B|1|A2|A|561
9F1B|1|A2|A|562
9F1B|1|A2|U|563
9F1B|1|A2|G|564
*
9F1B|1|A2|C|593
9F1B|1|A2|C|594
9F1B|1|A2|A|595
9F1B|1|A2|U|596
*
9F1B|1|A2|A|642
9F1B|1|A2|U|643
9F1B|1|A2|A|644
9F1B|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23