J5_9F1D_001

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

9F1D|1|A2|C|594

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9F1D_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0883

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9F1D|1|A2|C|30
9F1D|1|A2|U|31
9F1D|1|A2|U|32
9F1D|1|A2|G|33
9F1D|1|A2|PSU|34
*
9F1D|1|A2|A|522
9F1D|1|A2|A|523
9F1D|1|A2|A|524
9F1D|1|A2|U|525
9F1D|1|A2|A|526
9F1D|1|A2|A|527
9F1D|1|A2|C|528
*
9F1D|1|A2|G|559
9F1D|1|A2|G|560
9F1D|1|A2|A|561
9F1D|1|A2|A|562
9F1D|1|A2|U|563
9F1D|1|A2|G|564
*
9F1D|1|A2|C|593
9F1D|1|A2|C|594
9F1D|1|A2|A|595
9F1D|1|A2|U|596
*
9F1D|1|A2|A|642
9F1D|1|A2|U|643
9F1D|1|A2|A|644
9F1D|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23