J5_9F58_003
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9F58|1|a|U|719, 9F58|1|a|A|784, 9F58|1|a|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F58_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0485
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F58|1|a|C|675
9F58|1|a|G|676
9F58|1|a|A|677
9F58|1|a|G|678
*
9F58|1|a|C|702
9F58|1|a|G|703
9F58|1|a|U|704
9F58|1|a|A|705
9F58|1|a|A|706
*
9F58|1|a|U|713
9F58|1|a|G|714
9F58|1|a|A|715
9F58|1|a|A|716
9F58|1|a|C|717
9F58|1|a|G|718
9F58|1|a|U|719
9F58|1|a|A|720
9F58|1|a|G|721
*
9F58|1|a|C|749
9F58|1|a|G|750
9F58|1|a|A|751
*
9F58|1|a|U|782
9F58|1|a|A|783
9F58|1|a|A|784
9F58|1|a|G|785
9F58|1|a|A|786
9F58|1|a|G|787
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L28
- Chain M
- 60S ribosomal protein L29
- Chain U
- 60S ribosomal protein L36-A
- Chain m
- 60S ribosomal protein L13-A
- Chain r
- 60S ribosomal protein L18-A
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