J5_9F9S_002
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9F9S|1|L1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.048
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|L1|G|658
9F9S|1|L1|G|659
9F9S|1|L1|A|660
9F9S|1|L1|G|661
9F9S|1|L1|U|662
9F9S|1|L1|C|663
*
9F9S|1|L1|G|799
9F9S|1|L1|G|800
9F9S|1|L1|A|801
9F9S|1|L1|C|802
*
9F9S|1|L1|G|941
9F9S|1|L1|U|942
9F9S|1|L1|U|943
9F9S|1|L1|C|944
*
9F9S|1|L1|G|1375
9F9S|1|L1|C|1376
*
9F9S|1|L1|G|1431
9F9S|1|L1|C|1432
9F9S|1|L1|A|1433
9F9S|1|L1|G|1434
9F9S|1|L1|A|1435
9F9S|1|L1|U|1436
9F9S|1|L1|C|1437
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LG
- 60S ribosomal protein L13-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lm
- 60S ribosomal protein L32
- Chain Lq
- 60S ribosomal protein L28
- Chain Ly
- 60S ribosomal protein L4-A
Coloring options: