J5_9F9S_003
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9F9S|1|L1|U|719, 9F9S|1|L1|A|784, 9F9S|1|L1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0636
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|L1|C|675
9F9S|1|L1|G|676
9F9S|1|L1|A|677
9F9S|1|L1|G|678
*
9F9S|1|L1|C|702
9F9S|1|L1|G|703
9F9S|1|L1|U|704
9F9S|1|L1|A|705
9F9S|1|L1|A|706
*
9F9S|1|L1|U|713
9F9S|1|L1|G|714
9F9S|1|L1|A|715
9F9S|1|L1|A|716
9F9S|1|L1|C|717
9F9S|1|L1|G|718
9F9S|1|L1|U|719
9F9S|1|L1|A|720
9F9S|1|L1|G|721
*
9F9S|1|L1|C|749
9F9S|1|L1|G|750
9F9S|1|L1|A|751
*
9F9S|1|L1|U|782
9F9S|1|L1|A|783
9F9S|1|L1|A|784
9F9S|1|L1|G|785
9F9S|1|L1|A|786
9F9S|1|L1|G|787
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LL
- 60S ribosomal protein L18-A
- Chain Li
- 60S ribosomal protein L36-A
- Chain Lp
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L28
- Chain Ly
- 60S ribosomal protein L4-A
Coloring options: