J5_9F9S_007
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9F9S|1|M2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_007 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0508
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9F9S|1|M1|A|20
9F9S|1|M1|G|21
9F9S|1|M1|G|22
*
9F9S|1|M2|C|35
9F9S|1|M2|G|36
9F9S|1|M2|A|37
9F9S|1|M2|U|38
9F9S|1|M2|G|39
9F9S|1|M2|A|40
9F9S|1|M2|A|41
9F9S|1|M2|G|42
*
9F9S|1|M2|U|102
9F9S|1|M2|G|103
9F9S|1|M2|A|104
9F9S|1|M2|A|105
9F9S|1|M2|C|106
9F9S|1|M2|G|107
*
9F9S|1|M2|C|115
9F9S|1|M2|G|116
*
9F9S|1|M2|C|137
9F9S|1|M2|A|138
9F9S|1|M2|U|139
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
- Chain M2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mf
- 60S ribosomal protein L39
- Chain Mh
- 60S ribosomal protein L37-A
- Chain Mj
- 60S ribosomal protein L35-A
- Chain Mt
- 60S ribosomal protein L25
Coloring options: