J5_9F9S_019
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9F9S|1|S1|A|93, 9F9S|1|S1|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_019 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0512
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|S1|C|54
9F9S|1|S1|A|55
9F9S|1|S1|U|56
9F9S|1|S1|G|57
*
9F9S|1|S1|C|90
9F9S|1|S1|G|91
9F9S|1|S1|A|92
9F9S|1|S1|A|93
9F9S|1|S1|U|94
9F9S|1|S1|G|95
9F9S|1|S1|G|96
9F9S|1|S1|C|97
*
9F9S|1|S1|G|386
9F9S|1|S1|A|387
9F9S|1|S1|G|388
*
9F9S|1|S1|C|409
9F9S|1|S1|A|410
9F9S|1|S1|C|411
*
9F9S|1|S1|G|422
9F9S|1|S1|G|423
9F9S|1|S1|C|424
9F9S|1|S1|A|425
9F9S|1|S1|G|426
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain La
- 60S ribosomal protein L23-A
- Chain Se
- 40S ribosomal protein S4-A
- Chain Sg
- 40S ribosomal protein S6-A
- Chain Si
- 40S ribosomal protein S8-A
- Chain Sj
- 40S ribosomal protein S9-A
- Chain Sy
- 40S ribosomal protein S24-A
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