J5_9FDA_003

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9FDA|1|B|A|109, 9FDA|1|B|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9FDA_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0928

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9FDA|1|B|C|58
9FDA|1|B|A|59
9FDA|1|B|A|60
9FDA|1|B|G|61
*
9FDA|1|B|C|106
9FDA|1|B|G|107
9FDA|1|B|G|108
9FDA|1|B|A|109
9FDA|1|B|C|110
9FDA|1|B|G|111
9FDA|1|B|G|112
9FDA|1|B|G|113
*
9FDA|1|B|C|314
9FDA|1|B|A|315
9FDA|1|B|C|316
*
9FDA|1|B|G|337
9FDA|1|B|A|338
9FDA|1|B|C|339
*
9FDA|1|B|G|350
9FDA|1|B|G|351
9FDA|1|B|C|352
9FDA|1|B|A|353
9FDA|1|B|G|354

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20